PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC26695_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 110aa MW: 12488 Da PI: 10.4678 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.2e-20 | 43 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa++ ++g RrC26695_p1 43 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 93 79*****998.**********843...6**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-13 | 43 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.92E-23 | 43 | 103 | No hit | No description |
PROSITE profile | PS51032 | 23.288 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 44 | 102 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-36 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 45 | 56 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-33 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MTGSSISSVK QQSPVEDEES HHHHQDQEES HRTNNKKRVR PDPGYRGVRM RTWGKWVSEI 60 REPRKKSRIW LGTFSTAEMA ARAHDAAALT IKGTSAVLNF PELATCLPRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 45 | 101 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018465107.1 | 9e-57 | PREDICTED: ethylene-responsive transcription factor ERF037-like | ||||
Swissprot | O80654 | 6e-48 | ERF37_ARATH; Ethylene-responsive transcription factor ERF037 | ||||
TrEMBL | A0A0D3CW76 | 3e-54 | A0A0D3CW76_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H3Q8 | 3e-54 | A0A3P6H3Q8_BRAOL; Uncharacterized protein | ||||
STRING | XP_010471905.1 | 2e-55 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77200.1 | 3e-43 | ERF family protein |