PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC26244_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32135.1 Da PI: 6.1479 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.5 | 3.1e-12 | 25 | 65 | 11 | 50 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++ R +++lKKA+ELS LC+++v++i + +g+l +++ RrC26244_p1 25 SSYKARGATVLKKAFELSELCGIDVCLIWYDREGNLvMTWP 65 58999**************************9998725776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0052 | 4 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-11 | 24 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-7 | 26 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.634 | 26 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MKMTTTRKNK LSVRKETVFK KPSSSSYKAR GATVLKKAFE LSELCGIDVC LIWYDREGNL 60 VMTWPEKEEG NVRAMAERYS MLSEQERDKK SNNLSRFLNK KMIRDKKESL SKRDYKFFQQ 120 VSELEDSLQS RLQTLQESLL LDISSNDSTL INAYHHQASS LLNYPSSSTE SCVDDVSTTT 180 TSMNHPQSKF SILLYNHDDG TFTQLANSSA RPSFEQEPQI PCDQDYGYLD LLLGEQGMRG 240 CNNFDLLPTT SSTILPSLMQ TQTPNFQQFM QTQQAYDQIP S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444867.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL53 | ||||
TrEMBL | A0A397YPC5 | 1e-133 | A0A397YPC5_BRACM; Uncharacterized protein | ||||
STRING | Bra004071.1-P | 1e-134 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15639 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27070.1 | 3e-42 | AGAMOUS-like 53 |