PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 275aa    MW: 31077.3 Da    PI: 6.4043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20101151256
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr++  +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++ge
  RrC25_p3 101 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAHKIRGE 151
               59****999.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-34100159No hitNo description
Gene3DG3DSA:3.30.730.109.8E-33101159IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-23101159IPR016177DNA-binding domain
SMARTSM003801.0E-36101164IPR001471AP2/ERF domain
PROSITE profilePS5103223.248101158IPR001471AP2/ERF domain
PRINTSPR003672.5E-11102113IPR001471AP2/ERF domain
PfamPF008475.6E-14102151IPR001471AP2/ERF domain
PRINTSPR003672.5E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDIALNMNGY VEEFMKALEP FMTVTSSFKP IPVTPVNQTL PVSNQTGPIG LNQLTPTQIL  60
EIQTELHLRQ NQTRRRGCGG HLLNPKPAPM KKTDVTRQVK LYRGVRQRQW GKWVAEIRLP  120
KNRTRLWLGT FETAEEAALA YDQAAHKIRG ENARLNFPDI AFHGEYKQAL SPSVNAKIEA  180
TCGSSEFPPS KLEKPAKTGE VFFGFHYMGH HELEQEREVM DIFGYGSGSS PESDLTLLDF  240
SSEWIKEDES FCMGLQKCPS FEIDWDAIEK LSGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22100158160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490252.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-131ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A397Z0991e-161A0A397Z099_BRACM; Uncharacterized protein
TrEMBLM4E6F41e-161M4E6F4_BRARP; Uncharacterized protein
STRINGBra024358.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-123ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]