PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25815_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 337aa    MW: 37398.2 Da    PI: 6.1807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25815_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08281301526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C FaHg
  RrC25815_p1 281 PCPDFRK-GACRRGDMCEFAHG 301
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1629171IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-1636171IPR020683Ankyrin repeat-containing domain
CDDcd002044.46E-1537169No hitNo description
PfamPF127966.8E-1174146IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0279107IPR002110Ankyrin repeat
PROSITE profilePS5029717.68879180IPR020683Ankyrin repeat-containing domain
PRINTSPR014156.8E-68095IPR002110Ankyrin repeat
SMARTSM002480.048112144IPR002110Ankyrin repeat
PROSITE profilePS5008812.529112147IPR002110Ankyrin repeat
PRINTSPR014156.8E-6131145IPR002110Ankyrin repeat
SMARTSM003562.7E-6276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5281303IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-6281301IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.141311335IPR000571Zinc finger, CCCH-type
SMARTSM0035648311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MCCGSDQLNQ SSSSEDTTTN AEMNHLRVET EDTFASLLEL AANNDVEGVR LSIDRDPSCV  60
DEPGLWYGRQ KGSKTMVNDH RTPLMVAATY GSIDVIKLIL SLTDVNRSCG SDQTTALHCA  120
ASGGAVSAVQ VVKLLLAAGA DLNLMDADGQ RAGDVIVVPP KLEGVKLMLQ ELLSAATAER  180
NLRVVTNARS RSHSPTEEED GESSPFKMKS SMEFKKEYPV DPSLPDIKNS IYSTDEFRMY  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRGDMCEFAH  300
GVFECWLHPA QYRTRLCKDG TGCARRVCFF AHVPEEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895681e-166AC189568.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465940.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3P6D5L80.0A0A3P6D5L8_BRACM; Uncharacterized protein
STRINGBo4g191180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]