PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC256_p7

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 564aa MW: 59597 Da PI: 9.0322

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC256_p7	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.2e-10	197	241	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r+rW++eEd l+ avk+ G g+W+ Iar +Rt+ q+ rw RrC256_p7 197 RKRWSAEEDADLIAAVKRCGEGNWAHIARGEFrGRRTASQLSQRW 241 89************************965557999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.086	192	249	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-13	193	248	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.18E-12	194	247	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-8	196	247	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-8	197	241	IPR001005	SANT/Myb domain
CDD	cd11660	3.23E-13	198	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MVDSSNKRRK RTISESDIAT LLQRYDAKTI LRLLQEMSFY SNVKMDWNEL VKKTATGITN 60 AREYQMLWRH LSYRDPLLLP VDDDDAQPLD DDSDIECELE ASPPVSVEAS VEAIAHVKVM 120 AASYVPPRES DVLDDSTSEA PLTINIPYTL PHEPSDSPWL SRGMNITFPV SLQKPTPAEG 180 INGNGPASIS MASRKIRKRW SAEEDADLIA AVKRCGEGNW AHIARGEFRG RRTASQLSQR 240 WPHLRKKYDT STSGSQPGVQ QTEAQIAVNH ALSLALGNRP PSKKVAVGTQ GNGGRPSQGQ 300 QQSKPVVVRA ATTVPASKSR LGVKKTTASS TFRSDLMVTA NSAAAAACMG GVLTGPSVPK 360 VESVENASTA CMPCPSGSLV VPEAEPGKTV AASSITKPVG PANARPLANG NLKHVTPSPS 420 SVKPPLTASR SEVSTMFSAS THLASAASVP ATVLPSKPTA ETVSCKPDGG HKEQDRGDGA 480 NSLVAIQSNN MISTNSEISR GKQAATHANQ SLLDKTAVPS ISGAGSKSKS KCEVDNNVGS 540 LNKVSNACGE PTEVVTVRGT GQGV

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MVDSSNKRRK RTISESDIAT LLQRYDAKTI LRLLQEMSFY SNVKMDWNEL VKKTATGITN  60
AREYQMLWRH LSYRDPLLLP VDDDDAQPLD DDSDIECELE ASPPVSVEAS VEAIAHVKVM  120
AASYVPPRES DVLDDSTSEA PLTINIPYTL PHEPSDSPWL SRGMNITFPV SLQKPTPAEG  180
INGNGPASIS MASRKIRKRW SAEEDADLIA AVKRCGEGNW AHIARGEFRG RRTASQLSQR  240
WPHLRKKYDT STSGSQPGVQ QTEAQIAVNH ALSLALGNRP PSKKVAVGTQ GNGGRPSQGQ  300
QQSKPVVVRA ATTVPASKSR LGVKKTTASS TFRSDLMVTA NSAAAAACMG GVLTGPSVPK  360
VESVENASTA CMPCPSGSLV VPEAEPGKTV AASSITKPVG PANARPLANG NLKHVTPSPS  420
SVKPPLTASR SEVSTMFSAS THLASAASVP ATVLPSKPTA ETVSCKPDGG HKEQDRGDGA  480
NSLVAIQSNN MISTNSEISR GKQAATHANQ SLLDKTAVPS ISGAGSKSKS KCEVDNNVGS  540
LNKVSNACGE PTEVVTVRGT GQGV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492336.1	0.0	PREDICTED: uncharacterized protein LOC108862637
TrEMBL	A0A0D3C8U4	0.0	A0A0D3C8U4_BRAOL; Uncharacterized protein
STRING	Bo5g010120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4823	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	0.0	MYB_related family protein