PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25612_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 143aa    MW: 16477.9 Da    PI: 10.7957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25612_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-175597246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g+ T+eE+ l+++++++lG++ W++Ia++++ gRt++++k++w++
      RrC25612_p1 55 GNITAEEQHLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 97
                     677******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.81E-1548109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-2249103IPR009057Homeodomain-like
PROSITE profilePS5129422.30149103IPR017930Myb domain
SMARTSM007171.5E-1453101IPR001005SANT/Myb domain
PfamPF002492.7E-165597IPR001005SANT/Myb domain
CDDcd001677.41E-125897No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKKTGRGKEI TSQKEEGRVR MGSWTMEEDL ILFNYMVKVF GIPSPKPLWP DVRQGNITAE  60
EQHLIIQLHA KLGNRWSKIA KHLPGRTDNE IKNFWRTKIQ RHIKLSSSTE TKNIRDCTGN  120
SQRSEMTTTD QGSSSKASIW PRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-135010352105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-135010352105C-Myb DNA-Binding Domain
1msf_C8e-135010352105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180913e-63AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankAY0887613e-63AY088761.1 Arabidopsis thaliana clone 94595 mRNA, complete sequence.
GenBankAY5195823e-63AY519582.1 Arabidopsis thaliana MYB transcription factor (At3g01530) mRNA, complete cds.
GenBankBT0055743e-63BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489878.12e-61PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA14e-52MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A3P5ZMF61e-56A0A3P5ZMF6_BRACM; Uncharacterized protein
TrEMBLM4C9X61e-56M4C9X6_BRARP; Uncharacterized protein
STRINGBra001005.1-P2e-57(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.12e-54myb domain protein 57