PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2514_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 679aa    MW: 77540.1 Da    PI: 7.4183
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2514_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.23.2e-1962155190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  ++ ++ k +r+r ++r+gC+a l+++k +     +w+vt + ++HnH+l 
  RrC2514_p1  62 DFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgLVEWRVTGFANHHNHDLL 155
                 6**************9998877356667999*************999999*********************99766679************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1562155IPR004330FAR1 DNA binding domain
PfamPF105513.2E-20278367IPR018289MULE transposase domain
PfamPF044341.8E-8553587IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.742556589IPR007527Zinc finger, SWIM-type
SMARTSM005759.2E-7564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSDDAGQMLL IYDDPSDHRS LSLDDASSTE ESPDGTGLSL EAVNDVIPYI GQRFLTHDAA  60
YDFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS  120
RCGCQAYLRI SKITELGLVE WRVTGFANHH NHDLLEPSQV RFLPAYRSIS DADKSRILMF  180
SKTGITVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE  240
QDPNFKFEFT LDANDKLENI AWSYASSIQA YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN  300
NYGVPCFFGC VLLRDENVRS WSWALQAFTG FMSGKAPQTI LTDHNMCLKE AIDGEMPATK  360
HALCIWMVVG KFPSWFNAAL GERYNDWKAE FYRLYHLESI EEFELGWRDM VNSFGLHTNR  420
HINSLYASRS LWSLPYLRSH FLAGMTLSGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQATEQQT MQQNLQNISL KTGAPMESNA ASVLTPFAFS KLQEQLVLAA HYASFQMDDG  540
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQLPDRYLPL  600
RWRRISTSFS KTFRSNADDH GERVQFLQNL VSTLVSESSK SKERLEIATE QTSILLSRIR  660
EQPISSLSLR DMSSIQRNF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4245950.0AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.
GenBankBT0004860.0BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433772.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A397YVN90.0A0A397YVN9_BRACM; Uncharacterized protein
STRINGBo5g010680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]