PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC24924_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 29324.2 Da PI: 7.6739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00015 | 12 | 32 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+ksF++ L H+r+H RrC24924_p1 12 CQVCKKSFPNGRALGGHMRSH 32 ********************9 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 235 | 257 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cg++F + L H ++H RrC24924_p1 235 YKCELCGRVFESGQALGGHKKVH 257 9***********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.577 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-9 | 10 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.39E-5 | 11 | 34 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.07E-6 | 192 | 257 | No hit | No description |
PROSITE profile | PS50157 | 9.245 | 194 | 221 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-8 | 194 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-10 | 234 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.24 | 235 | 257 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 235 | 257 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 237 | 257 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMYSLLKETR NCQVCKKSFP NGRALGGHMR SHTRTLSASN GSTVPSLKTP TKLGENIRLN 60 ETVLMRSVHA SEVGRPEPDL KREEGGQQIT CKRKIVVDLD ECQSPLTAVE EAALVIVAMS 120 KGERPANSQN WNAIDRLLST PNEKEEYTRK SVDIDSDDDG RVLTEAIDQN EEGDEDDEDE 180 TYLVEKENQC KKKFKCDICG KVCHSYQALG GHRTSHRTKR LKICDKNGQP MVRHYKCELC 240 GRVFESGQAL GGHKKVHYAF L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479278.1 | 1e-170 | PREDICTED: zinc finger protein ZAT1 | ||||
TrEMBL | A0A3P6ETF4 | 1e-142 | A0A3P6ETF4_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g098740.1 | 1e-142 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 3e-62 | C2H2-like zinc finger protein |