PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2491_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26102.8 Da PI: 5.4955 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 40 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g RrC2491_p2 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90 59*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.63E-17 | 40 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-30 | 41 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.641 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 41 | 99 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-11 | 41 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-34 | 41 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVKQERKIQV TTSSSSLSQS SSSTSSSLAL HHQSCKDKIK KYKGVRMRSW GSWVSEIRAP 60 NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANFNFPHI NTTSQFLIDI DEKTPLSPKS 120 IQKIAAQAAS SISSDAFTPL SSSNDDDHDD GIQNHPSPSS SSAASSPPGD HHNDDDLVSL 180 MASFVDEHVT LMDPSWYDHN EMFFINGAFD YSPQLISSKT TMDDLYDDAD IQLWSFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 41 | 99 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00246 | DAP | Transfer from AT1G77640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189370 | 0.0 | AC189370.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455741.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor ERF013 | ||||
Swissprot | Q9CAP4 | 7e-85 | ERF13_ARATH; Ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | A0A397YZ43 | 1e-118 | A0A397YZ43_BRACM; Uncharacterized protein | ||||
STRING | Bra015660.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 4e-68 | ERF family protein |