 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC2481_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
Trihelix |
| Protein Properties |
Length: 267aa MW: 29615.5 Da PI: 6.8005 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2481_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 54 | 4.4e-17 | 63 | 151 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrerg...ferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
+W+++ +++Liea ++ + ++g lk+++W +v++ + e g + r+ +qCk++++ ++k+yk++k+ + + s++++f++lea
RrC2481_p1 63 CWSEEATKVLIEAWGDRFAEPGKGTLKQQQWHQVAEIVNESGhckYARTDVQCKNRIDTVKKKYKQEKAKIASS-GDGPSKWAFFNKLEA 151
7*************************************666533379**********************99995.77788*******985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MMEEEDEAHS PVNPSSLAPI LPTVASSSQS PLALTVHTPS VTVTVNKNGR GGGEGGGGGR 60
DDCWSEEATK VLIEAWGDRF AEPGKGTLKQ QQWHQVAEIV NESGHCKYAR TDVQCKNRID 120
TVKKKYKQEK AKIASSGDGP SKWAFFNKLE ALIGGGGEAP PMRWHFRKPS ASETESESEP 180
EPEHSAESLP PKRLKMGVVG EVAKAILGFT EAYEKAESGK IKVMLELEKE RMKFVKEMEL 240
QRMQFLKTQM EMTQKNQVEE RSKTRIE
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 49 | 59 | RGGGEGGGGGR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ973845 | 6e-75 | DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence. |
