PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2433_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 326aa    MW: 36768.4 Da    PI: 4.5519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2433_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.6e-14149209654
                 HHHHHHHHHHHHHHHHHHHCTSCCC...............TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkas............kapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk++             + + K++  +iL  A++Y+k+L
  RrC2433_p6 149 LMAERRRRKRLNDRLSMLRSIVPKSTymyvlflldpssTQFNDKMDRTSILGDAIDYMKEL 209
                 589*********************777***********9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.82E-4134213No hitNo description
PROSITE profilePS5088814.291143209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-13146218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11149209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-11149215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-14150218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDMEWTQMST QESNNLDGNN IDFFPSGRNL EYLCFNNPLQ EDDNNIDHTF SSLMDLISQP  60
PPLLLHQPPQ PSSSPTPLFS SSFEYPFLET LQDVIESPYY PPLELSASQE GNNNDNSSSP  120
LMEESKSFMR ETNKKKRNKN VVGQPSKNLM AERRRRKRLN DRLSMLRSIV PKSTYMYVLF  180
LLDPSSTQFN DKMDRTSILG DAIDYMKELL EKINKLKELG INSDLKDSLT TDQPMVRNSP  240
KFEVDQREGN THIDICCSTK PGLLLSTVGT LEINLGLEIQ QCVISCFGDF SLQASCSEVA  300
GQRDCITSED IKQALLKNAG YGGTCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132139NKKKRNKN
2134156KKRNKNVVGQPSKNLMAERRRRK
3151158ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885943e-31AF488594.1 Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds.
GenBankAL3539953e-31AL353995.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project).
GenBankCP0026883e-31CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444342.10.0PREDICTED: transcription factor bHLH61
SwissprotQ9LXA91e-113BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A397XW201e-162A0A397XW20_BRACM; Uncharacterized protein
STRINGBra009022.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-101bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]