PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2430_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10574 Da PI: 9.5356 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.9e-08 | 17 | 56 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ ++ gRt++++k++w++ RrC2430_p3 17 GDFSEEEDNIICSLFASIGSR----LETHLH-GRTDNDIKNYWNT 56 789****************99....555***.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-9 | 1 | 22 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.28E-14 | 1 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.165 | 11 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0012 | 15 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-6 | 17 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.46E-4 | 19 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-12 | 23 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
SCRLRWLNYL RPNIRHGDFS EEEDNIICSL FASIGSRLET HLHGRTDNDI KNYWNTKLKK 60 KLIATMAPPP PHQLWVKYNK YSNKSEDGTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670118 | 5e-88 | KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439280.1 | 5e-44 | PREDICTED: transcription factor RAX2 | ||||
Swissprot | Q9SJL7 | 4e-40 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A078H3J0 | 3e-41 | A0A078H3J0_BRANA; BnaC04g08340D protein | ||||
TrEMBL | A0A0D3BRD1 | 3e-41 | A0A0D3BRD1_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g031070.1 | 5e-42 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-42 | MYB family protein |
Publications ? help Back to Top | |||
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