PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC240_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 324aa MW: 35452.3 Da PI: 9.913

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC240_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	101.8	4.3e-32	73	132	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprC+s ntkfCyynny+ +qPr++CkaCrryWt GG lr++P Gg rr+n k+ RrC240_p2 73 PEAALNCPRCNSINTKFCYYNNYNPTQPRHYCKACRRYWTDGGKLRDIPEGGRRRRNSKK 132 67899**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	61	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-30	76	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.618	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVFSSNWSQP TNPSQLQLRE NGSLVNGHEL LSHQLPPFPS NPNIHHAAAS SGLPAMLGGY 60 MAERARQPKA PRPEAALNCP RCNSINTKFC YYNNYNPTQP RHYCKACRRY WTDGGKLRDI 120 PEGGRRRRNS KKNKNGNSKS PSSSSKLPSP TVNAPSSSSG QLGTNHHFPF LPTLQHLTQL 180 GGIGLNLAAA NGSNQAHQFG ASLMNDLGFL HVGDGRNNLA PVTRNIHDND NDNRENNLMG 240 SGGFTLFDPR SGLHAFQNEG NIRNNVSFSP TSMVDSRIYQ TGPVNMEEQP DLVNLSRPVS 300 GLTPPVNQIN QYVWNNSNFS GPSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ584284	1e-145	FJ584284.1 Brassica rapa subsp. pekinensis OBF binding protein 2 Dof1.1-1 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489307.1	0.0	PREDICTED: dof zinc finger protein DOF1.1-like isoform X1
Swissprot	Q8L9V6	1e-124	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	A0A397Y7T5	1e-163	A0A397Y7T5_BRACM; Uncharacterized protein
TrEMBL	C5HYF6	1e-163	C5HYF6_BRARP; OBF binding protein 2 Dof1.1-1
STRING	Bra031588.1-P	1e-163	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.3	1e-109	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]