PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2385_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 577aa    MW: 64062.2 Da    PI: 10.1613
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2385_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-133482448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     W t+E++ll +avk++G+++W+++a+++     ++ ++ +c++++q+++
       RrC2385_p3 34 WGTWEELLLTCAVKRHGSKDWDSVAKEVVsrssLNASAPSCRLKYQDLK 82
                     **********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-63085IPR009057Homeodomain-like
SMARTSM007174.6E-73084IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-43281IPR009057Homeodomain-like
CDDcd001672.58E-73482No hitNo description
PfamPF002492.3E-113482IPR001005SANT/Myb domain
PROSITE profilePS500906.2143482IPR017877Myb-like domain
Gene3DG3DSA:1.20.920.102.2E-22244380IPR001487Bromodomain
SuperFamilySSF473707.85E-21248355IPR001487Bromodomain
SMARTSM002972.3E-24248357IPR001487Bromodomain
PfamPF004394.2E-14260341IPR001487Bromodomain
CDDcd043698.57E-19261352No hitNo description
PROSITE profilePS5001413.948267338IPR001487Bromodomain
PROSITE patternPS006330272330IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MNDDYTTNIH SSSGSDKNHN GDGNGNQYQI SHVWGTWEEL LLTCAVKRHG SKDWDSVAKE  60
VVSRSSLNAS APSCRLKYQD LKRRFQDSVD DDDDGRGNNG AVAEDIDGEI PWLEQLRSLR  120
VAELRRDVQR CDESILSLQL KVKKLEEEEK DGDGKPDLED DSKTVRSLPS MNESNSTASA  180
DHERLVGDKT VENSSNPHPD HKAAVEEEEG TVSRRSGMSH SGELGESGTS TVNRKRKGNI  240
YGGSGDNIKP DENQSQPLMM EIVKLIRSHP RGSVFESPLK SQETKDYKSV IRQHMDIKTI  300
EKKMEKGSYV SSSLSFYRDL KLLFTNAIVF FPTSSAESVA AHELRNLVSN EMKKTTGISS  360
HRVIKSEGGS LVSKQKSSAP PLVACKKKSS VSAKTLPSSS SFKQKDEKKV LEEKDVTTTT  420
TRSSRRTSKG VEVVAKDTKM VRAKKNNKKQ TDSSDDDADD KVETPKIEKK RASEKKKSVA  480
EFLKRIKSNS PQKGKETTSK DQKKSDGNVK NSKAKPRELR SNSTGKKKAE AENNGNKSSS  540
KRKQSKKEAE EVTAVATRKR GRESGKDNQQ PKKRSRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461319.10.0PREDICTED: micronuclear linker histone polyprotein-like
TrEMBLA0A3P6C7V40.0A0A3P6C7V4_BRACM; Uncharacterized protein
STRINGBo4g106310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-170DNA-binding bromodomain-containing protein