PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC23834_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28537.7 Da PI: 4.5911 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 22 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eEd+ ++++++++G++ W+ Ia ++ gRt++++k++w++ RrC23834_p1 22 RGEFTPEEDDTIIKLHALMGNK-WAGIATSLP-GRTDNEIKNYWNTN 66 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.368 | 1 | 16 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 2 | 29 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-22 | 3 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.015 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 22 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-12 | 24 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 30 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
LKRCGKSCRL RWANYLKPDI KRGEFTPEED DTIIKLHALM GNKWAGIATS LPGRTDNEIK 60 NYWNTNLKKR LTQKGLDPTT HKPIDPADQT GFEPKYHKLG SSGSARFLNC IARKYAGASN 120 RDLLTGIIIR NSSNIAEGSL YSVEVDSPTE NSTFTLLNKE AARSSALTSF LTNNMSSSSG 180 LSDNCSFADN LDLFFSNEEI SDMYMNVDNV GIMEELKDIL SYGGADAGDV ENSPEFLDSW 240 NEEDDLDLEN YYWVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-21 | 3 | 71 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437920.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | O64399 | 1e-105 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A0D3AY34 | 1e-158 | A0A0D3AY34_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g161170.1 | 1e-159 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9331 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-107 | myb domain protein 34 |