PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23588_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 326aa    MW: 34137.6 Da    PI: 6.7074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23588_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-06151177530
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.a 30 
                  h+++Er RR+ri +++  L+el+P+ +
  RrC23588_p1 151 HSIAERLRRERIAERMKALQELVPNgN 177
                  99**********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.89E-5144185No hitNo description
SuperFamilySSF474591.83E-7144181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.69146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-7148180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMDSLLTPSS SSHMQTQATT FDHEDFLNHI FSSAPWPTVD ETHAPQPPPS DGFVDSRNQQ  60
IMMMPLTSHQ QNDNVDGSST HDIYSGFSAT GSLPFHIPQG SGGGPIHQQG QTQRQPQQQA  120
SASTDTGGTA ASPSHSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKVL  180
SMSRLGGAAS VSSQISEAGG SHGNASSALA GGNQPTGNSD DGLTMTEHQV AKLLEEDMGS  240
AMQYLQGKGL CLMPISLATA ISTATNHTRN SLIPGAADVG GRPSSSNLSG KTLQSMNTLK  300
LNSNGNGMAE GSSSVAVQEA VSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481222.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG91e-146BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A397ZKX20.0A0A397ZKX2_BRACM; Uncharacterized protein
STRINGBra032111.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-117LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]