PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2310_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 683aa    MW: 74596.9 Da    PI: 7.8518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2310_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67e-06289309526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f + G Ck Gd C +aHg
  RrC2310_p2 289 PCPDFKK-GSCKQGDMCEYAHG 309
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1720156IPR020683Ankyrin repeat-containing domain
CDDcd002049.64E-1622154No hitNo description
SuperFamilySSF484032.33E-1524156IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-976145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46776169IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1276106IPR002110Ankyrin repeat
PROSITE profilePS5008811.648111146IPR002110Ankyrin repeat
SMARTSM002481.1E-4111143IPR002110Ankyrin repeat
SMARTSM003561.2E-4284310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4289311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915289311IPR000571Zinc finger, CCCH-type
SMARTSM00356110319342IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362319343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MCGLFKKLDT SENTLAKPMT TDAECEHSFS ALLEFAADND VEGLKKHLSA AAVPCIINQV  60
GLWYRRQRFA RRMVVEQRTP LMVASLYGSV DVVKLILSSP EAELNLSCGP DKSTALHCAA  120
SGASVKALDV VKLLLSAGAD PNLPDAHGNR PVDVLAVSPR SPGLRTILEE ILMKDETISS  180
SLGSSFRSLS SSPDNGSSLL SLDSVSSPTK ANGVVDGGFE SEKKEYPIDP SLPDIKSGIY  240
STDEFRMFSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKFHYTCVPC PDFKKGSCKQ  300
GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CNRRVCFFAH LKEELRPLYA STGSGLPSPR  360
ASSSAMDMAS VLNMLPGSPS SAAQQHSFTP PISPSGNGVM QPPHSSMGWP QQNIPALHLP  420
GSNVQLSRLR SSLNARDVQE FEMHMSSSPR FMNHSARPKN LEEHFSASEV LSPRFSDQLA  480
VSSVLSPSHK SALLNHLQSS NKQQSMLSPI RTNLMSSPKN VEQHSLLQSP RGMEPISPMN  540
ARMKQQLHSR SLSSREFGSN LPRDVMQGGG GDSGSPLSPW SSWDQNHGNK VDWSVQSDEL  600
GRLRKSHSLA NNSNSNREAD VTWVQQLVKE TASPRNGSSN LSMNMNGGAR PLVQGGGSSG  660
NTHSDGRESD ILDAWLDQLQ LDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470498.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_006399772.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain