PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2273_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 279aa MW: 32475.3 Da PI: 9.5735

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2273_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.9	2.5e-46	7	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+++yLk+ gkk ++ evi +diy+++PwdLp+ + +e+ewyfF++r++k+ g r++r+t++gyWkatg+d++++s ++ RrC2273_p3 7 LPGFRFHPTEEELLDFYLKNMFYGKKSKV-EVIGFLDIYRHDPWDLPRLSTIGEREWYFFVPRERKQGDGGRPSRITEKGYWKATGSDRKIISLsePKR 104 59**********************999.99***********7777799*********************************99755677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vglkktLvfy+grap g+ktdWvm+e+r+ RrC2273_p3 105 MVGLKKTLVFYTGRAPGGTKTDWVMNEFRM 134 7*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	47.972	6	155	IPR003441	NAC domain
SuperFamily	SSF101941	1.24E-50	7	145	IPR003441	NAC domain
Pfam	PF02365	1.3E-23	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSREIQLPGF RFHPTEEELL DFYLKNMFYG KKSKVEVIGF LDIYRHDPWD LPRLSTIGER 60 EWYFFVPRER KQGDGGRPSR ITEKGYWKAT GSDRKIISLS EPKRMVGLKK TLVFYTGRAP 120 GGTKTDWVMN EFRMPDHCTL PKIYRKATSL KVLEQRADME AKMKKTRPSS PLSSCETNSF 180 AGKEEDLMMN SFPFHQPEAM KEPNHILTLQ EHNENAKIKQ KQREAERNEP SSSLKLPSGD 240 LPLPELLLPK QGFELGQDQF FSISPWLQNL TPIINLLYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-42	8	134	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738270	1e-178	KF738270.1 Brassica napus NAC transcription factor 36 (NAC36.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437138.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	1e-78	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0D3D3K5	0.0	A0A0D3D3K5_BRAOL; Uncharacterized protein
STRING	Bo7g015050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-149	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]