PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC22040_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 262aa MW: 30125.5 Da PI: 4.5104

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC22040_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	64	2.6e-20	102	162	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++k s + r YYrC++a +C+++k+v++ ++ p+v +tY g+H +e RrC22040_p1 102 NDCFTWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQDSPSVYRTTYVGKHVCE 162 8*************************99999***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	18.716	96	164	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.2E-21	96	163	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-21	98	163	IPR003657	WRKY domain
SMART	SM00774	8.3E-29	101	163	IPR003657	WRKY domain
Pfam	PF03106	9.3E-21	102	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MFQGADKAVE ALLRGQESAN LLKTMLEHQR TSSVSIEPLF DTLLDSFSFA LSLFTSSNTQ 60 PHRDSSQSKS TPVTARKSPK KNSNEEECLE HYRDDSPTPL HNDCFTWRKY GQKKIKTSSH 120 QRCYYRCAYA KDRNCNATKR VQQIQDSPSV YRTTYVGKHV CEVTSFPEPN DDIANGSKMI 180 RFDTFDQAMP DAVIMPELVQ VEQEAITIEE DTDQIMNVEF DINELLVDDD DQLWAYQFPP 240 FSPGDLMFLD DLSEFDYNPF HV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-13	106	162	13	69	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430070	0.0	KF430070.1 Brassica rapa WRKY transcription factor 64 (WRKY64) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470240.1	0.0	PREDICTED: probable WRKY transcription factor 64
Swissprot	Q9C557	2e-84	WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBL	V5RF92	1e-156	V5RF92_BRACM; WRKY transcription factor 64
STRING	Bo2g095820.1	1e-143	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5609	18	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66560.1	6e-78	WRKY DNA-binding protein 64