PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21797_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 216aa    MW: 24528.7 Da    PI: 10.4687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21797_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195981123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C++ F ++  L  H++ H
  RrC21797_p1 59 FSCNYCKRKFYSSQALGGHQNAH 81
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-65686No hitNo description
PROSITE profilePS5015711.4065986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLKIKKRGHQ DLELGLNLLP SATASSELNL IDSFETNSSS TSHHHLKNHQ ERREDPRVFS  60
CNYCKRKFYS SQALGGHQNA HKRERTLAKR GQYYRMSLSS SSPYSAFAFG HCPVSRFASM  120
PSLPLYGSAN NRSTLGIQAH STTHDPFFGR PKANVSHVFK QSIHQKLSIG KMFPEKFHHD  180
VNSSNATAPK LERIEHFKSK HEDNNQIKTI DLTLKL
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324760.0AC232476.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444639.11e-136PREDICTED: zinc finger protein 1-like
RefseqXP_018464624.11e-136PREDICTED: zinc finger protein 1-like
SwissprotQ424851e-102ZFP1_ARATH; Zinc finger protein 1
TrEMBLA0A397YS491e-104A0A397YS49_BRACM; Uncharacterized protein
TrEMBLM4CH991e-104M4CH99_BRARP; Uncharacterized protein
STRINGBra003582.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-100zinc-finger protein 1
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]