PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2167_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 648aa    MW: 72057.4 Da    PI: 6.1231
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2167_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.3e-2955140187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k++k++ke++++++  + +t+++f+qlea
  RrC2167_p1  55 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYHKRTKETRGGGRH-EGKTYKFFSQLEA 140
                 8*********************************************************************955.5569*******85 PP
2trihelix103.71.3e-32410494186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+
  RrC2167_p1 410 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 494
                 8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.10848112IPR017877Myb-like domain
SMARTSM007170.003152114IPR001005SANT/Myb domain
PfamPF138372.1E-1954141No hitNo description
CDDcd122033.74E-2654119No hitNo description
SMARTSM007170.0011407469IPR001005SANT/Myb domain
PROSITE profilePS500907.131409467IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.2E-4409466IPR009057Homeodomain-like
PfamPF138377.1E-22409494No hitNo description
CDDcd122032.81E-30410474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0042631Biological Processcellular response to water deprivation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MEQGGGGGGG NEVVEEASPI SSRPPANMEE LMGFSAAVDD GGGLGGSSSS SSGNRWPREE  60
TLALLRIRSE MDSTFRDATL KAPLWEHVSR KLLELGYKRS AKKCKEKFEN VQKYHKRTKE  120
TRGGGRHEGK TYKFFSQLEA LNTTPPPPSS LDVAPLSVAN PAQQPSPSSQ FPVFSLTQTP  180
PSQALPPHTV SFTPNPLPPP PLPSVGPTFP GGTFSSHSSS TASGMGSDDD DDNMDVDQAG  240
PSSHKRKREN RGGKMMELFE GLVRQVMQKQ AAMQRSFLEA VEKREQERLA REEAWKRQET  300
SRLAREHEIM SQQRAASASR DAAIISLIQK ITGHTIQLPP SLSSQPPHQP PPAAKRPSQA  360
VEPPHLQPIM AIPQQQVLPL PPPPPPTNQQ QQQQQEMIMS SDQSLPSSSR WPKEEILALI  420
NLRSGMEPRY QDNVPKGLLW EEISTSMKRM GYNRNAKRCK EKWENINKYY KKVKESNKKR  480
PQDAKTCPYY HRLDLLYSNK VLGSGAGSST SGLPQDQLST IIQKQSPLSA VKPSQEGDVN  540
VHQTHGSASS DEEEPREETP QGAEKPEDLV MRELMQQKQH QEDSMIGEYE KIEASHNYNN  600
MEVEEEEMDM DEELDEDEKS TAYEIAFQSP EKRGGNGHTE SPFLTMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00177DAPTransfer from AT1G33240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447113.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A397YAF10.0A0A397YAF1_BRACM; Uncharacterized protein
TrEMBLM4F6M10.0M4F6M1_BRARP; Uncharacterized protein
STRINGBra036731.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-136GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]