PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21618_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 320aa    MW: 37123.8 Da    PI: 10.3306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21618_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.44e-112303061991
                  -HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3  19 pkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   k+++ ++      ++++ es++ t+ + ++  sW+v +    + +r+v+++GW++ +++  Lk+gD ++F+l++ +ef 
  RrC21618_p1 230 RKSYL-NCprvfeeDHIPSESMEYTIHHsKRKSSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFRLIKPTEFI 306
                  44444.334445555567789999999956779******..888888**************************9877774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.08219313IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15220308IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-14222307IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-8223303No hitNo description
SMARTSM010193.0E-6225312IPR003340B3 DNA binding domain
PfamPF023622.3E-9237309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIRGDQSELI GLQGNMKKIG IDRGWEILRS TIYTDTCDLG SSSDDGLDNK GMIFLLFNRR  60
SVWIYLVYRQ RSQRFVRSGA WKVWIGLLMW LRIIVILEDN QIGERERRRS SYDGCGEETW  120
GRKVMFKNQF VSDNAYGASG IKKEEGESSY KDVKKEDEAC ESVDGVEIET TKKKAEASKT  180
SSKKKKSKKV VKEVDESSKG RKKKAEKLKT FKKKKKIKKN GVPEFEITIR KSYLNCPRVF  240
EEDHIPSESM EYTIHHSKRK SSWNVLCLVR ENRTVFSSGW SRLAREFPLK VGDRCTFRLI  300
KPTEFILITK KARKESTVVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199207GRKKKAEKL
2201215KKKAEKLKTFKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893484e-70AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489745.16e-73PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP62e-42Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A397ZLX04e-70A0A397ZLX0_BRACM; Uncharacterized protein
STRINGBra022189.1-P1e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2614722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-38B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]