PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2149_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 312aa    MW: 33859.7 Da    PI: 8.3142
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2149_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822220.24.5e-68111522145
      DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslks 100
                 ++gr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kpl ++e  g+ ++ s++ss+q s++s
  RrC2149_p3  11 SAGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGYKPL-ASELSGTPTNYSTNSSIQPSPQS 108
                 79*************************************************************************.*********************** PP

      DUF822 101 salaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                 sa++sp++sy+ sp sssfpsps++d ++++ +  llp+l++ ++
  RrC2149_p3 109 SAFPSPAPSYHGSPVSSSFPSPSRYDGNNTS-SYLLLPFLHNIAS 152
                 ****************************986.6899999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.9E-6212137IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAAGAGGGSS SAGRTPTWKE RENNKKRERR RRAITAKIYS GLRAQGNYKL PKHCDNNEVL  60
KALCLEAGWI VEDDGTTYRK GYKPLASELS GTPTNYSTNS SIQPSPQSSA FPSPAPSYHG  120
SPVSSSFPSP SRYDGNNTSS YLLLPFLHNI ASSIPSNLPP LRISNSAPVT PPLSSPTSRG  180
SKRRLITEQL PNGGSLLRHP LFAISAPSSP TRRGGHQTPP TIPECDESEE DSIEDSGRWI  240
SFQSTAPPSP TFNLVQQTSM DIDMKRPEWG MSGRGSEFEF ENGTVKPWEG EMIHEVGVED  300
LELTLGGAKT RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-271492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-271492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-271492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-271492372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470423.10.0PREDICTED: BES1/BZR1 homolog protein 2-like
SwissprotQ94A431e-173BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A398APS21e-174A0A398APS2_BRACM; Uncharacterized protein
TrEMBLM4D5E91e-174M4D5E9_BRARP; Uncharacterized protein
STRINGBra011706.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.17e-86BES1/BZR1 homolog 2