PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2073_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 337aa MW: 36958.1 Da PI: 10.3092

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2073_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	275	332	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ RrC2073_p1 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCVDETSMLIVTYEGEHNHS 332 9***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.4E-15	235	271	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.8E-33	261	332	IPR003657	WRKY domain
PROSITE profile	PS50811	29.126	268	334	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	271	332	IPR003657	WRKY domain
SMART	SM00774	3.5E-37	273	333	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	275	331	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEEAEAATKA AVDSCHGVLN LLSQQTSDPK SITVGTREAV SKFRRVASLL SSGLGQRKIK 60 KLNNNKLRSH MLPQHIFLES PVCSNNPISG SLPVLAPTPL QIVPPSAASY GEFDPKQRPG 120 HPPGMMLNQK MCVDKSFLEL KPPSSRAVDQ NPYQFIPNHQ QGVYSRSNSG LNLKFNGPGG 180 GSCYSPSVSN GSRSFVSSLS MDTSVADYNR NSFHLFGLPQ GSDHVSQHSR RTGCSGSLKC 240 GGRSKCHCSK KRKLRVRRSI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS 300 SLRGCPARKH VERCVDETSM LIVTYEGEHN HSRLLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	261	332	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593168	0.0	KM593168.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY146) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434810.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	0.0	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A078H8R5	0.0	A0A078H8R5_BRANA; BnaA02g31030D protein
TrEMBL	M4DVS3	0.0	M4DVS3_BRARP; Uncharacterized protein
STRING	Bra020617.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	0.0	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]