PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2020_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 319aa    MW: 34531.5 Da    PI: 8.4705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2020_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.6e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+++++ + k+ G+g+Wk I+r + k Rt+ q+ s+ qky
       RrC2020_p4 136 AWTEDEHKRFLLGLKKVGKGDWKGISRNFVKSRTPTQVASHAQKY 180
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.841129185IPR017930Myb domain
SuperFamilySSF466891.72E-16131185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-17132183IPR006447Myb domain, plants
SMARTSM007172.7E-8133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-9136180IPR009057Homeodomain-like
PfamPF002493.5E-10136180IPR001005SANT/Myb domain
CDDcd001672.19E-8136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
THTSSPYLYG SKEIESGCCN KKPKQTQGAK SEKIIQMAAV SSSSETGGGG GGTGTAEKGE  60
IMLFGVRVVV DPMRKCVSLN NLSDYEKSSP DEEIPKIGDG EADVTAAVAA GYASANDAVQ  120
IPSSSAGNRE RKRGIAWTED EHKRFLLGLK KVGKGDWKGI SRNFVKSRTP TQVASHAQKY  180
FLRRTNLNRR RRRSSLFDIT TETVTGMHME QDQGHHPQDI SSLPETDISS GQQAMQVFTQ  240
VAVVPTRTEN APQIVPVTFQ ANPPFNLNTD AAEVPAPLSL NLSLSFNNLN EQSNSRHSAF  300
TMLPSFSDGD SNSSIIRVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00149DAPTransfer from AT1G19000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451739.11e-170PREDICTED: transcription factor MYB1R1
RefseqXP_018451740.11e-170PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B01e-54MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0D3DQA81e-149A0A0D3DQA8_BRAOL; Uncharacterized protein
STRINGBo8g068220.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-104MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]