PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2002_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 321aa    MW: 34951.6 Da    PI: 9.8288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2002_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000487193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++Cp+Cg  F+    L  H+r+H
  RrC2002_p4 71 HPCPICGVEFPMGQALGGHMRKH 93
                78********************9 PP
2zf-C2H212.40.00048222244123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+Cg  F+    L  H+r+H
  RrC2002_p4 222 HPCPICGVEFPMGQALGGHMRKH 244
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.47E-63093No hitNo description
PfamPF139125.9E-113156IPR007087Zinc finger, C2H2
PROSITE profilePS501578.8713259IPR007087Zinc finger, C2H2
SMARTSM003552.63254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139127.1E-117094IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8277198IPR007087Zinc finger, C2H2
SMARTSM003550.0677193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-6177244No hitNo description
PfamPF139125.6E-11178203IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058179206IPR007087Zinc finger, C2H2
SMARTSM003551.4179201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827222249IPR007087Zinc finger, C2H2
SMARTSM003550.067222244IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-10222245IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVADIKSTVE ATAANCLMLL SRVGQEDTKR VFTCKTCLKE FHSFQALGGH RASHKKPNNE  60
NLSETKNAVA HPCPICGVEF PMGQALGGHM RKHRNENGGG VTLVTRALLP EPKVTTLKRS  120
SSGKRVACLD LSLGMVENLN LKLELGRTIK STVEATAANC LMLLSRVGQE NGGDVKRVYT  180
CKTCLKEFHS FQALGGHRAS HKKPNNENLS GLIKKPKTPS SHPCPICGVE FPMGQALGGH  240
MRKHRNENGG SGVTLVTQAL LPEPTVTTLK KSSSGKRVSC LDLSLGIVEN LNLKLELGRT  300
HWRFVIYYIF CKLDIPTTCV D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1666211e-111DQ166621.1 Brassica carinata C2H2 zinc finger protein 1 (ZF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461614.11e-98PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424101e-87ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A3P6DJD73e-98A0A3P6DJD7_BRAOL; Uncharacterized protein
STRINGBo2g025350.11e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-90C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  3. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  4. Le CT, et al.
    ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses.
    Plant Physiol., 2016. 170(1): p. 540-57
    [PMID:26556796]
  5. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  6. Tang Y, et al.
    Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana.
    Environ. Pollut., 2016. 212: p. 605-614
    [PMID:27016889]
  7. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  8. Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL
    Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays.
    Plant Physiol. Biochem., 2017. 117: p. 51-60
    [PMID:28587993]
  9. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]