PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC19564_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 345aa MW: 39126.9 Da PI: 7.4768

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC19564_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	180	235	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ RrC19564_p1 180 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIKELMKVDGLTNDEVKSHLQKYRLH 235 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.395	177	237	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-27	179	238	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.97E-17	179	238	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-29	180	235	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-6	182	233	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MIKKLSSMDY KQKRERCGQY IEALEEERRK IQVFQRELPL CLDLVTQAIE ACKTELPGTD 60 TDNMYGQSEC SEQTTGECRP VLEQFLTTKD SSTSNEEEEF NDEHGNHNPD NDPEDKNMKS 120 DWLKSVQLWN QPDTFLPKEK GTQEKMVDTV VKKDESMKKE PMANCGERRK REVEKDGGRK 180 QRRCWSSQLH RRFLNALQHL GGPHVATPKQ IKELMKVDGL TNDEVKSHLQ KYRLHTRRPS 240 QTVRNNGISQ TQHLVVVEGI WVPQSDYSTG RTTGGATTSG TTTTTTGICG GMAAPPLPQW 300 PSLSNFRPSI IVEQKESGSP TEEVVVRCSS PAMSSSTRNH YVKNI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MIKKLSSMDY KQKRERCGQY IEALEEERRK IQVFQRELPL CLDLVTQAIE ACKTELPGTD  60
TDNMYGQSEC SEQTTGECRP VLEQFLTTKD SSTSNEEEEF NDEHGNHNPD NDPEDKNMKS  120
DWLKSVQLWN QPDTFLPKEK GTQEKMVDTV VKKDESMKKE PMANCGERRK REVEKDGGRK  180
QRRCWSSQLH RRFLNALQHL GGPHVATPKQ IKELMKVDGL TNDEVKSHLQ KYRLHTRRPS  240
QTVRNNGISQ TQHLVVVEGI WVPQSDYSTG RTTGGATTSG TTTTTTGICG GMAAPPLPQW  300
PSLSNFRPSI IVEQKESGSP TEEVVVRCSS PAMSSSTRNH YVKNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269\|PubMed:19341407, ECO:0000269\|PubMed:22545134, ECO:0000269\|PubMed:25723764}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449911.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FX67	1e-179	HRS1_ARATH; Transcription factor HRS1
TrEMBL	A0A078G6M4	0.0	A0A078G6M4_BRANA; BnaA08g24340D protein
TrEMBL	M4DJQ6	0.0	M4DJQ6_BRARP; Uncharacterized protein
STRING	Bra016734.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13508	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	0.0	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Kiba T, et al. Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. Plant Cell, 2018. 30(4): p. 925-945 [PMID:29622567]