PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1953_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 311aa    MW: 36804.9 Da    PI: 6.4539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1953_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.13.2e-2542124186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf r+++qCk+kw+nl +r+k+++++e +    +++++py+++++
  RrC1953_p4  42 QWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRFKACETTEPEA---TRQQFPYYNEIQ 124
                 7********************************************************************96...45679****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.7E-439101IPR001005SANT/Myb domain
CDDcd122032.71E-2141103No hitNo description
Gene3DG3DSA:1.10.10.607.5E-54298IPR009057Homeodomain-like
PfamPF138374.9E-2042126No hitNo description
SuperFamilySSF466897.18E-542107IPR009057Homeodomain-like
PROSITE profilePS500908.1424399IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDQRNPFHHQ HHHLIQQQQL HPPPQSTTTA MDPGGGAERI PQWSLEETKE LLGIREELDQ  60
TFMETKRNKL LWEVVAAKMA DKGFARTAEQ CKSKWKNLVT RFKACETTEP EATRQQFPYY  120
NEIQSIFTAR IQRVLWSEAT EPSTSSKRKH HQFSSDEEEE EQDTHEEPNQ SINDELLAFV  180
ETHKKDAQVI TTTNPRKRAQ KGKGITGSSS KVGSTLREIL EDFMRQTVKM EKEWRDAWEM  240
NERAREKRET EWRRRIAELE EERAAAERRW MEREDERRLR EEARAQKRDT LIGILLNKLN  300
KDNNDDDHQG F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445127.10.0PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-132TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A078FAR21e-148A0A078FAR2_BRANA; BnaCnng03970D protein
TrEMBLA0A0D3EIG81e-148A0A0D3EIG8_BRAOL; Uncharacterized protein
STRINGBo9g186070.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-108Trihelix family protein