PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1940_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 545aa    MW: 62311.4 Da    PI: 7.4966
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1940_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix963.5e-3042125186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++l+
  RrC1940_p3  42 RWPRPETLALLRIRSEMDKTFRNSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELQ 125
                 8********************************************************************975544..6******98 PP
2trihelix103.81.2e-32372457187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev aLi++r+++e +++++  k+plWee+s  mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tc yf+qlea
  RrC1940_p3 372 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISGGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCLYFHQLEA 457
                 8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04239101IPR001005SANT/Myb domain
CDDcd122031.13E-2441106No hitNo description
PROSITE profilePS500907.0044199IPR017877Myb-like domain
PfamPF138371.8E-2041127No hitNo description
SMARTSM007170.0043369431IPR001005SANT/Myb domain
PROSITE profilePS500907.387371429IPR017877Myb-like domain
PfamPF138372.6E-22371458No hitNo description
Gene3DG3DSA:1.10.10.606.7E-4371428IPR009057Homeodomain-like
CDDcd122031.89E-25372436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSGNSSGLLD SFHGGGVGGS GEEEKDIKME ETGDVGGGGG NRWPRPETLA LLRIRSEMDK  60
TFRNSTLKAP LWEEISRKMM ELGYKRSAKK CKEKFENVYK YHKRTKEGRT GKSEGKTYRF  120
FEELQALEAL INSYPPEPES PPAKASTATT LVTTTTSSTP LKHHQVSVKP IATNPNFLLK  180
QPSATTPFPI YSNNLNTGFR PTSNDLINNV SSLNLFSSST SSSTASDDED DHHQDKRSRK  240
KRKYWKGLFT KLTKELMEKQ EKMQKRFLET FENQERERIS REEAWRVQEA ARINREHETL  300
VHERSSAVAK DAAIISFLHK ISGGGQQQQP HQNHKVPQRK PYHSEHSITF ESKEPRPVLF  360
DSNHSLSPSS SRWPKTEVEA LIRIRKNLEA NYQENGTKGP LWEEISGGMR RLGYNRSAKR  420
CKEKWENINK YFKKVKESNK KRPLDSKTCL YFHQLEALYN EREKSGALPL LLPVVGTPQR  480
KLLLPQETQT EVETDQGDKG EEGESEEDDY EDEDEDEEGD NETSDFEIVL NKTFSPMDIN  540
NNIFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478956.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM4CVN90.0M4CVN9_BRARP; Uncharacterized protein
STRINGBra008286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein