PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC19221_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 202aa MW: 22818.6 Da PI: 9.8376

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC19221_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.4e-12	67	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky RrC19221_p1 67 PWTDEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 111 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.003	1	20	IPR017884	SANT domain
PROSITE profile	PS51294	17.547	60	116	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-16	62	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-17	63	115	IPR006447	Myb domain, plants
SMART	SM00717	7.1E-9	64	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-10	65	111	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-9	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.34E-9	67	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MIPGKTVYDV MKQYSKLEED VSDIEAGRVP VPGYPSASSP LGFDQDTCRK RPSWGRGSDH 60 DRKKGIPWTD EEHRRFLLGL LKYGKGDWRN ISRNFVVSKT PTQVASHAQK YYLRQLSGAK 120 DKRRPSIHDT TTVNLLNANR NRYFSVHRDI LPDLGFVDKD NAEDGLMSMS PNRYSANLFS 180 PSSSPFDDAI CFAGANAFRA RS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440196.1	1e-147	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_018440197.1	1e-147	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	3e-60	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A078HEX6	1e-133	A0A078HEX6_BRANA; BnaA01g30920D protein
TrEMBL	A0A3P5ZHP7	1e-133	A0A3P5ZHP7_BRACM; Uncharacterized protein
STRING	Bra034173.1-P	1e-127	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4340	26	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.2	1e-120	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]