PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC190_p7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 161aa MW: 19109.1 Da PI: 10.2448 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 61.1 | 2.9e-19 | 4 | 95 | 2 | 99 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-.HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvld.eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekik 98 F +yei++d++l+++isws++++sfv+++ +e f+k++L+k+F n++ F+ L++YgF +++ ++++ eF hk+ F +gk ell+k++ RrC190_p7 4 FHVYVYEIVDDPSLDSIISWSKSNKSFVIWNpTELFKKRILKKFF-CCNLSQFITELDKYGFVRIEGSDEQ-------LEFGHKQyFVRGKPELLNKMR 94 66779*************************944567888888887.5799*******************99.......******989********9987 PP X CS HSF_DNA-bind 99 r 99 RrC190_p7 95 L 95 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.3E-22 | 1 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.39E-20 | 2 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-20 | 3 | 90 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-5 | 4 | 27 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.9E-18 | 5 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-5 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MYQFHVYVYE IVDDPSLDSI ISWSKSNKSF VIWNPTELFK KRILKKFFCC NLSQFITELD 60 KYGFVRIEGS DEQLEFGHKQ YFVRGKPELL NKMRLQAAMN RMKKSAKEAK ARAEAEQNGA 120 VRDKPRIIVH ADDLRKRYRQ MFGPSTIAET PLENRFRHLR I |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469624.1 | 1e-105 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A0D3A4F0 | 2e-95 | A0A0D3A4F0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g021700.1 | 4e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 2e-24 | HSF family protein |