PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1907_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LSD | ||||||||
Protein Properties | Length: 91aa MW: 10114.9 Da PI: 9.0117 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.4 | 4.2e-12 | 3 | 26 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr lLsYPrG ++V+C++C t RrC1907_p1 3 CGSCRRLLSYPRGTKHVKCSCCLT 26 **********************87 PP | |||||||
2 | zf-LSD1 | 44.8 | 2e-14 | 41 | 65 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C lL+YP+GApsVRC++C V RrC1907_p1 41 CSSCELLLMYPYGAPSVRCSSCKSV 65 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.9E-15 | 1 | 30 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-9 | 3 | 25 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.2E-12 | 38 | 66 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.1E-12 | 41 | 65 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MVCGSCRRLL SYPRGTKHVK CSCCLTLNLV LEAYQVGQVK CSSCELLLMY PYGAPSVRCS 60 SCKSVTDIRE DNKRPPWSVQ QGPLKTLSSV R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450880.1 | 2e-60 | PREDICTED: protein LOL2-like isoform X1 | ||||
Refseq | XP_018450881.1 | 1e-60 | PREDICTED: protein LOL2-like isoform X2 | ||||
Swissprot | O65426 | 4e-49 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A397YBR3 | 2e-56 | A0A397YBR3_BRACM; Uncharacterized protein | ||||
STRING | Bra020902.1-P | 9e-57 | (Brassica rapa) | ||||
STRING | Bo3g162470.1 | 3e-56 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-51 | lsd one like 2 |