PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1872_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 265aa    MW: 30046.7 Da    PI: 4.7483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1872_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.8e-11201011298
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  s+rlvlp +   ++ ++++ ++  +l+ ++g+ W+vk +   +++++ +++GW +F  +    ++Df++F++dg+++f  +v++fr
  RrC1872_p1  20 FSQRLVLPSDNR-KY-YPTPLPQASVLRKPEGNFWTVKWT-ISQDDTISFEDGWTKFITDTAPLDRDFLLFSYDGSRTF--LVSIFR 101
                 568999999986.55.345578889**************4.33344599************************997666..***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-145101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-137101IPR015300DNA-binding pseudobarrel domain
CDDcd100177.44E-97101No hitNo description
PROSITE profilePS5086311.5619103IPR003340B3 DNA binding domain
SMARTSM010191.7E-59103IPR003340B3 DNA binding domain
PfamPF023629.2E-919101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-5189265IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVFTPYPDFL IIYNSHDLPF SQRLVLPSDN RKYYPTPLPQ ASVLRKPEGN FWTVKWTISQ  60
DDTISFEDGW TKFITDTAPL DRDFLLFSYD GSRTFLVSIF RDGLPVKPKD PVNIQEISDE  120
DDDGDQDMEK EEDNNLNMIN SRSLGSSDKD DADTTGGEAN KAHGRSRKGW SLRKKRAEAI  180
GDPEMYLDDP SNPCFIVTSS SSHMLFISMQ VINDYGLKFG GTIKFIDGFG ELKANIGNGK  240
GRVVVYKWKE IYKRNGAKPE DVIIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.11e-128PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH12e-92Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A3P6A2J91e-127A0A3P6A2J9_BRACM; Uncharacterized protein
TrEMBLM4DV741e-127M4DV74_BRARP; Uncharacterized protein
STRINGBra020417.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.14e-83B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]