PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1852_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 535aa    MW: 59027.3 Da    PI: 8.3502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1852_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-06388412125
                 --S---SGGGGTS--TTTTT.-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdr.CkFaH 25 
                 +kt+lC++f++ G C+y ++ C+FaH
  RrC1852_p2 388 FKTKLCCNFRA-GNCPYVASvCRFAH 412
                 69*********.******988***** PP
2zf-CCCH39.21.1e-12500525126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  +G+C++G +C+FaHg
  RrC1852_p2 500 WKTRICNKWEMSGFCPFGTNCNFAHG 525
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.1406.7E-6840339No hitNo description
SuperFamilySSF515565.75E-4659337IPR032466Metal-dependent hydrolase
PfamPF049094.7E-2761337IPR006680Amidohydrolase-related
Gene3DG3DSA:4.10.1000.107.1E-12385421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.46387415IPR000571Zinc finger, CCCH-type
SMARTSM003560.011387414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6440467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859440468IPR000571Zinc finger, CCCH-type
SMARTSM003560.035440467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-9441467IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8497527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-13498526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812499527IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6499526IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9500525IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0016787Molecular Functionhydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAAAATLRLT IPLAFSSHPL TSSVRSRASK SKASFRTVKM AANTVLSDPE TASSSSTPRV  60
IDSHLHIWAS PQEAATYPYF PGQEPTLTGD VEFLLKNMED ARVDGALIVQ PINHKFDHSL  120
VTSVLKKYPS KFVGCCLANP AEDGCGIKQL ESLVLESNYK AVRFNPYLWP AGQKMTNAVG  180
KAMFSKAGEL GVPVGFMCMK GLHLHLAEIE ELCTEFPRTT VLLDHAGFCK VPENGEDKDT  240
YTQLMELSRF PQVYVKFSAL FRISRRGFPY QDLTPLLSQV VSNFGANRVM WGSDFPFVVL  300
ECGYKEAKEA VTIIAKQASL SSSDMDWILG KTVMQLFPGQ WGFLVDVMTH PRDSSTNAVN  360
TDETESPCKK TRGSPSSSSS FEIGQPFFKT KLCCNFRAGN CPYVASVCRF AHTVEDLRRP  420
PPTQQETRGE FKIPAESGRP YKGRHCRKFN SGEGCPYGES CTFLHDEVSR NRESFVISLG  480
HRGGYGAGDG GNVGVVAPYW KTRICNKWEM SGFCPFGTNC NFAHGASGKS LRLFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1754270.0AK175427.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-86-C08.
GenBankAK2282470.0AK228247.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL14-69-K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434381.10.0PREDICTED: uncharacterized protein LOC108806703
TrEMBLA0A078H2P90.0A0A078H2P9_BRANA; BnaA05g08580D protein
STRINGBra005341.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-48C3H family protein