PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18389_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 44aa    MW: 5245.91 Da    PI: 4.9692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18389_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-121443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g WT+eEde+l+ +++++G+ +W++I+++
      RrC18389_p1 14 KGEWTAEEDEKLIAYINEHGMCDWRSIPKR 43
                     799************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.459944IPR017930Myb domain
SuperFamilySSF466891.93E-91043IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-121243IPR009057Homeodomain-like
PfamPF002495.9E-101443IPR001005SANT/Myb domain
CDDcd001671.13E-61643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 44 aa     Download sequence    Send to blast
MGRKTWFDDD GMKKGEWTAE EDEKLIAYIN EHGMCDWRSI PKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747535e-34KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449168.15e-25PREDICTED: transcription factor MYB80-like isoform X1
RefseqXP_018449169.15e-25PREDICTED: transcription factor MYB80-like isoform X2
RefseqXP_018450642.15e-25PREDICTED: transcription factor MYB80-like isoform X1
RefseqXP_018450643.15e-25PREDICTED: transcription factor MYB80-like isoform X2
TrEMBLA0A397YE844e-22A0A397YE84_BRACM; Uncharacterized protein
TrEMBLA0A3P6F6A32e-22A0A3P6F6A3_BRAOL; Uncharacterized protein (Fragment)
TrEMBLM4DJ684e-22M4DJ68_BRARP; Uncharacterized protein
STRINGBra016546.1-P6e-23(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.19e-24myb domain protein 47