PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18208_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 594aa    MW: 67597.6 Da    PI: 10.1612
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18208_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-3151108260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+hek
  RrC18208_p1  51 DDGYNWRKYGQKPIKGCEYPRSYYKCTQVNCPVKKKVERSS-DGQITQIIYKGQHDHEK 108
                  8****************************************.***************85 PP
2WRKY932.2e-29137194159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++p sYY+Ct+++C+v+k+ver+++d k+v++tYeg+Hnh+
  RrC18208_p1 137 LDDGYRWRKYGQKVVKGNPHP-SYYKCTTSNCTVRKHVERASTDVKAVITTYEGKHNHD 194
                  59*******************.9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-2841110IPR003657WRKY domain
SuperFamilySSF1182906.54E-2548109IPR003657WRKY domain
SMARTSM007741.5E-3450108IPR003657WRKY domain
PROSITE profilePS5081124.19151109IPR003657WRKY domain
PfamPF031063.9E-2451106IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-32125196IPR003657WRKY domain
SuperFamilySSF1182902.75E-25129196IPR003657WRKY domain
PROSITE profilePS5081134.176132196IPR003657WRKY domain
SMARTSM007741.5E-32137195IPR003657WRKY domain
PfamPF031069.1E-22138194IPR003657WRKY domain
Gene3DG3DSA:3.30.200.201.7E-30342448No hitNo description
SuperFamilySSF561122.83E-81343587IPR011009Protein kinase-like domain
PfamPF000691.8E-63350582IPR000719Protein kinase domain
SMARTSM002204.2E-72350584IPR000719Protein kinase domain
PROSITE profilePS5001140.668350594IPR000719Protein kinase domain
PROSITE patternPS001070356379IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.103.9E-47449591No hitNo description
PROSITE patternPS001080470482IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPPSTSTAVH GRQSFEVSQA DHRARNHYSN LANNNNNNRS YNVVNVDKPA DDGYNWRKYG  60
QKPIKGCEYP RSYYKCTQVN CPVKKKVERS SDGQITQIIY KGQHDHEKPQ NRRGSAGGAR  120
KKLTVIVVQT RSEVDLLDDG YRWRKYGQKV VKGNPHPSYY KCTTSNCTVR KHVERASTDV  180
KAVITTYEGK HNHDVPAPRN GTAAATSNTA GTSDHHRMTS MSGDMQQHMR FANTNNTGQS  240
PIKENCLFLR HLRRRLEAAV HRSHPQNSHK RHVLPTPPSH RPVVNSSPKK HRNNNEDHAP  300
RSKTTGVSLR SGLSHGNVEA EQVAAGWPTW LSSAAPEAVH GWIPLRAEDF EKREKIGQGT  360
YSNVFRACEV STGRVMALKK IRVQNFETEN IRFIAREIMI LRRLDHPNIM KLEGIIASRN  420
SGSMYFVFDY MEHDLEGLCT SPDIKFTEAQ IKCYMQQLIW GVEHCHVRGI MHRDIKAANI  480
LVNNKGVLKL ADFGLANIVT PRNKNQLTSR VVTLWYRAPE LLMGSTSYNV SVDLWSVGCV  540
FAEILTGRPL LKGRTEIEQL HKIYKLCGSP NEELWEKNKL HPQTKMFKTQ HQYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4nst_A2e-6335659321266Cyclin-dependent kinase 12
4nst_C2e-6335659321266Cyclin-dependent kinase 12
4un0_C2e-6335659321266CYCLIN-DEPENDENT KINASE 12
4un0_D2e-6335659321266CYCLIN-DEPENDENT KINASE 12
6ckx_A2e-6335659321266Cyclin-dependent kinase 12
6ckx_C2e-6335659321266Cyclin-dependent kinase 12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288975.10.0probable WRKY transcription factor 58
TrEMBLA0A3P6B2Q40.0A0A3P6B2Q4_BRAOL; Uncharacterized protein
STRINGBra039147.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-109WRKY DNA-binding protein 58