PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1807_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 43042.6 Da PI: 5.7205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 14 | 49 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +v+++G +R++k+c++rw +yl RrC1807_p3 14 KGAWTHEEDERLIAYVQLHGL------------KRCGKSCRLRWANYL 49 79******************4............5999*******9997 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.8e-18 | 98 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+++G g W+t +++ g++R++k+c++rw +yl RrC1807_p3 98 KGAWTPEEDQKLIAYVQLHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 145 79********************************************97 PP | |||||||
3 | Myb_DNA-binding | 47.4 | 4.4e-15 | 151 | 195 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eEd+ ++ +++++G++ W++Ia+ + gRt++++k++w++ RrC1807_p3 151 RGEFTPEEDDTIIMLHALMGNK-WAAIASSLA-GRTDNDIKNYWNTN 195 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 5 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.726 | 9 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-5 | 13 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.7E-15 | 15 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.28E-6 | 16 | 49 | No hit | No description |
Pfam | PF13921 | 1.8E-7 | 17 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-7 | 53 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 89 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.457 | 93 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.03E-30 | 95 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-14 | 97 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 98 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.95E-10 | 100 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 149 | 201 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.218 | 150 | 200 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 150 | 198 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 151 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.63E-10 | 153 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MVRTPCCKEE GIRKGAWTHE EDERLIAYVQ LHGLKRCGKS CRLRWANYLK PDIKRGEFTP 60 EDDDTIIKLH VLMGGQKTQE EELDMVRTPC CKEEGIKKGA WTPEEDQKLI AYVQLHGEGG 120 WRTLPEKAGL KRCGKSCRLR WANYLRPDIK RGEFTPEEDD TIIMLHALMG NKWAAIASSL 180 AGRTDNDIKN YWNTNLKKRL KRKGIDPINH KPINPTGFEP INHKLGSSGS ARLLNRVARK 240 YAGDLNRELL TGIIIGNSTI IADGSRNSCE VHSPTTTLLN KTAAISNAVT LNMFNNTSTS 300 SDSCSFSSDL DVLFSNEEMD NVALMGELKS ILSYGSADAG DNSPEFNVTD EMDFLDSWNE 360 EDDLEKFVSS LDSKTGLFMS LSEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 98 | 200 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ615604 | 0.0 | HQ615604.1 Brassica rapa subsp. pekinensis cultivar A5-2-1 MYB34-3 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438402.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | O64399 | 1e-139 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A286QYA9 | 1e-162 | A0A286QYA9_ISATI; MYB transcription factor 34 | ||||
STRING | Bra013000.1-P | 1e-155 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9331 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-135 | myb domain protein 34 |