PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17984_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 223aa    MW: 25207.1 Da    PI: 4.6828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17984_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-1332952097
                 HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                  +f+++h +       l + d s + W+vkl  ++++    l++GW+eF+ka+  ++gD +vF++dg++ f  +v v 
  RrC17984_p2 32 DEFLRNHTK------VLLISDASDKIWKVKL--DGNR----LAGGWEEFAKAHSFRDGDALVFRHDGDEIF--HVAVS 95
                 556655543......378889**********..9999....************************999988..66665 PP
2B335.91.4e-111712125899
                  EEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  58 ryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   y l+ GW+e++kang+k++D++v++l++++ +++v+k+++k
  RrC17984_p2 171 PYSLRHGWREMCKANGVKVNDSFVLELIWEDAANPVLKFCSK 212
                  3899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.8E-13798IPR003340B3 DNA binding domain
PfamPF023622.3E-83392IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-133395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-133495IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-93494No hitNo description
PROSITE profilePS5086311.2794298IPR003340B3 DNA binding domain
SMARTSM010190.065112213IPR003340B3 DNA binding domain
PfamPF023623.7E-10170212IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-7171212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-7172213IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.246174212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLSCNKIVVL FSWPYCVRLD PFIELYGKRL GDEFLRNHTK VLLISDASDK IWKVKLDGNR  60
LAGGWEEFAK AHSFRDGDAL VFRHDGDEIF HVAVSSPRSD SCGTSHHASP SFVDTDDAES  120
DDEYSESDDE EEECDDDAGS EDCCDSGDIL VNKNKKTEGG FPCFLRARVT PYSLRHGWRE  180
MCKANGVKVN DSFVLELIWE DAANPVLKFC SKVYHKHNFV LIS
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460925.11e-61PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650983e-28REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A3P6C2D85e-50A0A3P6C2D8_BRACM; Uncharacterized protein
STRINGBra010228.1-P2e-50(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.17e-28B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]