PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC17941_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 487aa MW: 54987.2 Da PI: 4.7364

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17941_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310.3	4.4e-95	155	486	22	373
GRAS 22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119 ++L r++e +s++gdp++R+ +yf+eAL+ +l pps ++ ++++k++++++P+ kf+hltaNqaIlea+++++ +H++Df+i RrC17941_p1 155 ETLIRIRESVSETGDPTERVGFYFAEALSDKLPP--------APPS------PEDFIFSYKTLNDACPYSKFAHLTANQAILEATQESRNIHVVDFGI 238 6799************************9988........3333......3579************************************** PP GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 qG+QW+aLlq La+R++g p + +l +tg+rL++fA+ lg++fef + v + ++ l+ +++rv+p+E+laVn++l+l++ lde+ RrC17941_p1 239 FQGIQWAALLQDLATRASGGPVYPLP--------PGPSLVATGNRLSDFARLLGLNFEFYP-VLTPVQLLNGSSFRVDPDEVLAVNFMLELYKRLDET 327 ***************9976553........5778*******************.799**************************999 PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae....rrerhet 311 +++ + + L+l +sl+P++v+++e e+++n F++r+ +al++ysa+f+sle +l r+s er vEr+l+gr+i ++v +++ r r+e+ RrC17941_p1 328 ATTVD---TALRLARSLKPRIVTLCEYEVSLNPVGFANRVKNALRFYSAVFESLEPNLERDSMERLRVERVLFGRRILDLVRPGNNDkpgtRSGRMEE 422 99988...*********************************************************************876655445599* PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373 +e+Wr +e+aGF+pv+ s++a++qa+lll +++ s y++ e++ ++ l W++ pL++vS+W RrC17941_p1 423 KEQWRVLMEKAGFEPVKPSNYAVSQANLLLWNYHySTLYSLVESEPRFIsLAWNNVPLLTVSSW 486 ******************************9999*****999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.051	109	465	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-92	155	486	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MAYMCTDSGN LMAIAQQLIK QKQRQQSQQE QHNPWPNQPL GYPLTDSDLS DPFQITGDPD 60 FHFPLLEPQN ATCSKGFRFS SDVEFDSDEW MESLLNGGHD PFLEFPSRLT LPSDLNPPVS 120 TAPPQLVSEE PDFDLNRPVL KAIHDCARLS DTKPETLIRI RESVSETGDP TERVGFYFAE 180 ALSDKLPPAP PSPEDFIFSY KTLNDACPYS KFAHLTANQA ILEATQESRN IHVVDFGIFQ 240 GIQWAALLQD LATRASGGPV YPLPPGPSLV ATGNRLSDFA RLLGLNFEFY PVLTPVQLLN 300 GSSFRVDPDE VLAVNFMLEL YKRLDETATT VDTALRLARS LKPRIVTLCE YEVSLNPVGF 360 ANRVKNALRF YSAVFESLEP NLERDSMERL RVERVLFGRR ILDLVRPGNN DKPGTRSGRM 420 EEKEQWRVLM EKAGFEPVKP SNYAVSQANL LLWNYHYSTL YSLVESEPRF ISLAWNNVPL 480 LTVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MAYMCTDSGN LMAIAQQLIK QKQRQQSQQE QHNPWPNQPL GYPLTDSDLS DPFQITGDPD  60
FHFPLLEPQN ATCSKGFRFS SDVEFDSDEW MESLLNGGHD PFLEFPSRLT LPSDLNPPVS  120
TAPPQLVSEE PDFDLNRPVL KAIHDCARLS DTKPETLIRI RESVSETGDP TERVGFYFAE  180
ALSDKLPPAP PSPEDFIFSY KTLNDACPYS KFAHLTANQA ILEATQESRN IHVVDFGIFQ  240
GIQWAALLQD LATRASGGPV YPLPPGPSLV ATGNRLSDFA RLLGLNFEFY PVLTPVQLLN  300
GSSFRVDPDE VLAVNFMLEL YKRLDETATT VDTALRLARS LKPRIVTLCE YEVSLNPVGF  360
ANRVKNALRF YSAVFESLEP NLERDSMERL RVERVLFGRR ILDLVRPGNN DKPGTRSGRM  420
EEKEQWRVLM EKAGFEPVKP SNYAVSQANL LLWNYHYSTL YSLVESEPRF ISLAWNNVPL  480
LTVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-123	138	487	3	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250\|UniProtKB:A0A024B7I0, ECO:0000250\|UniProtKB:Q53K16, ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433130.1	0.0	PREDICTED: scarecrow-like protein 7
Swissprot	Q9SCR0	0.0	SCL7_ARATH; Scarecrow-like protein 7
TrEMBL	V4LZW2	0.0	V4LZW2_EUTSA; Uncharacterized protein
STRING	XP_006404015.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4786	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50650.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]