PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC17927_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

EIL

Protein Properties

Length: 117aa MW: 13554.5 Da PI: 9.5095

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17927_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	141.3	1.4e-43	26	117	1	98
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 e+l++rm kd+++lkr+ke++k ++k ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWWkek RrC17927_p1 26 EDLERRMLKDRVRLKRIKEQTKTGSQTK------ETPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWWKEK 117 89*****************9865333......45779********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	3.6E-42	26	117	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MENEPDDLAR DNAAEIDVSD EDIDAEDLER RMLKDRVRLK RIKEQTKTGS QTKETPKKIS 60 DQAQRKKMSR AQDGILKYML KLMEVCKVRG FVYGIIPEKG KPVSGSSDNI RAWWKEK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460141.1	1e-73	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_018460142.1	1e-73	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	4e-68	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A078I9Z1	3e-68	A0A078I9Z1_BRANA; BnaA02g16550D protein
TrEMBL	A0A398ABY1	1e-68	A0A398ABY1_BRACM; Uncharacterized protein
TrEMBL	A0A3P6AH82	2e-68	A0A3P6AH82_BRACM; Uncharacterized protein (Fragment)
TrEMBL	M4CV64	1e-68	M4CV64_BRARP; Uncharacterized protein
STRING	Bra008110.1-P	2e-69	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32322	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	2e-70	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]