PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17751_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 40523.4 Da PI: 7.5701 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.3 | 1.6e-07 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H RrC17751_p1 197 HYCQICGKGFKRDANLRMHMRAH 219 68*******************99 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 319 | 334 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L++H + RrC17751_p1 319 CGTRFSRKDKLMSHVS 334 **************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.44E-6 | 195 | 222 | No hit | No description |
PROSITE profile | PS50157 | 12.632 | 197 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 197 | 224 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 197 | 219 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0023 | 198 | 217 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 249 | 282 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 55 | 287 | 309 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MSCFSETNSS STVYMNPMPV ATRSSEEGDG ISLSLLLDLS TIQDKVHEIQ SLINFFMISP 60 NNNNQKSTSS LAMSNVGSLV QEMITAASSM MHTCQKLQIS TSNNSNDDAN QTADGMFMEF 120 SQDFDPDHDF MGESSTNLLG LQERGHDSFL DHTGQNLDWY GTQTTNPKND HQRSKSRYGN 180 YEIVELSVED LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI NPTSRDKTVE 240 YSSLMRHYYS CPQQGCRWNQ RHEKFQPLKS VICAKNHYKR SHCPKIYMCR RCNVKHFSVL 300 SDLRTHEKHC GDIKWVCSCG TRFSRKDKLM SHVSLFSGHS PAHEPSQQQP PMITP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444949.1 | 0.0 | PREDICTED: zinc finger protein STOP1 homolog | ||||
Swissprot | Q0WT24 | 1e-178 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A3N6QGJ3 | 0.0 | A0A3N6QGJ3_BRACR; Uncharacterized protein | ||||
STRING | Bra002438.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-172 | C2H2 family protein |