PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17640_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 110aa    MW: 12677.1 Da    PI: 6.2514
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17640_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.72.1e-121461055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
                 + +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ ++ 
  RrC17640_p1  1 MVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQLLDKLNQASDS 46
                 579**********************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147029.95E-15144No hitNo description
PROSITE profilePS502178.979142IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.5E-11146No hitNo description
PfamPF001704.0E-10146IPR004827Basic-leucine zipper domain
SMARTSM003381.7E-5356IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.0E-10347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVSNRESARR SRMRKQRHLD ELLSQVAWLR SENQQLLDKL NQASDSNDLV IQENLSLKEE  60
NLELRQVIAS MKKLGGSTSI QGRYCSSSVD HELDQDFSCI TDDPRTYHPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400871e-141AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618656.17e-71PREDICTED: basic leucine zipper 43-like
RefseqXP_013659921.17e-71basic leucine zipper 43
SwissprotQ9FMC21e-23BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3AJ972e-69A0A0D3AJ97_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DK542e-69A0A3P6DK54_BRAOL; Uncharacterized protein
STRINGBo2g012800.13e-70(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.15e-51basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]