PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17536_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 323aa    MW: 36004 Da    PI: 6.2732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17536_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12135181455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  RrC17536_p1 135 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKKLQ 181
                  5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-12136185No hitNo description
SMARTSM003538.4E-14137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEDSTFTDLM IDTDEYLVDD WEQEFPVIPG ETTDHQSTKP GCESEFGFSL IPEIRPTKQM  60
KVNSTSSSSL SSSSSSCGTL TAAQVISFGS EDPKMNVVEA SFNFSNEANM EQNVRSKRKE  120
CGNNGGKREP HLLKEHVLAE RKRRQKLNER LIALSALLPG LKKADKASVL EDAIKHLKKL  180
QERVKKLEEE RGGAMKMDQS VILVKRSQVY VDDDSSSYSS TCSAASPPAS SLDEVSILKQ  240
TMPMIEARVS DRDLLIRIHC EKNRGCLIKI LSSLEKFHLE VVNSFTLPFG SSTLVITILS  300
KMDNKFSRPI EDVVKNIRLA LAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885640.0AF488564.1 Arabidopsis thaliana clone bHLH020 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480991.10.0PREDICTED: transcription factor NAI1-like
SwissprotQ8S3F11e-151BH020_ARATH; Transcription factor NAI1
TrEMBLA0A0D3C1B30.0A0A0D3C1B3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CIH00.0A0A3P6CIH0_BRAOL; Uncharacterized protein
STRINGBo4g151030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-150bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]