PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1743_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 201aa MW: 22145.8 Da PI: 9.5208 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.9 | 2e-16 | 41 | 124 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++++ ++++qCk+k+e+++kry+ + +++ + s++p++++l+ RrC1743_p1 41 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVARHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYSRLD 124 5*************************************87766777788999*****************99997......46****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.8E-21 | 39 | 126 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEDGDSNQEH PQPLPTNDDP SSPKKPSTSS IVVVDRLKRD EWSEGAVSSL LEAYETKWVL 60 RNRAKLKGQD WEDVARHVSS RASHTKSPKT QTQCKNKIES MKKRYRSESA TADGSSWPLY 120 SRLDHLLRGN ASTSVQPQPQ LQPQAVLPLN CSAPLLLLEP PSPAVTHPPQ QPPAAQMSHG 180 SNGVGTIKVT NQSFRFGMVF G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491556.1 | 1e-134 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A3P5YI55 | 1e-106 | A0A3P5YI55_BRACM; Uncharacterized protein | ||||
STRING | Bo8g083630.1 | 1e-106 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9859 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-69 | sequence-specific DNA binding transcription factors |