PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1717_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 21443 Da PI: 6.3918 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.8 | 1.9e-32 | 108 | 166 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dpkvv++tYeg Hnh+ RrC1717_p2 108 LDDGYKWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPKVVVTTYEGVHNHP 166 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.3E-33 | 95 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-28 | 100 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 103 | 168 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-38 | 108 | 167 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-26 | 109 | 166 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEGVDDTNPT LTLEEGENNP FSSFDDKTLM MMDPSLMFSS DMGPSSSCSP ASFYMSAQPE 60 NFQHAEGGGD AVEMGELSDH NKNSKGKGKR SSAMQRIAFH TRSDDDVLDD GYKWRKYGQK 120 SVKNNAHPRS YYRCTYHTCN VKKQVQRLAK DPKVVVTTYE GVHNHPCEML METLSPLLRQ 180 LQFLTRVSDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 98 | 165 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 98 | 165 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593163 | 0.0 | KM593163.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY115) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454283.1 | 1e-140 | PREDICTED: probable WRKY transcription factor 56 | ||||
Swissprot | Q8VWQ4 | 1e-104 | WRK56_ARATH; Probable WRKY transcription factor 56 | ||||
TrEMBL | A0A3P5Y6R4 | 1e-132 | A0A3P5Y6R4_BRACM; Uncharacterized protein | ||||
STRING | Bra027675.1-P | 1e-133 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 3e-84 | WRKY DNA-binding protein 56 |