PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16793_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 90aa    MW: 9954.54 Da    PI: 11.253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16793_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-193888155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  RrC16793_p1 38 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 88
                 68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-133888IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-263990IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-183989IPR016177DNA-binding domain
PROSITE profilePS5103220.9563990IPR001471AP2/ERF domain
SMARTSM003808.4E-223990IPR001471AP2/ERF domain
PRINTSPR003671.3E-84051IPR001471AP2/ERF domain
CDDcd000185.75E-244090No hitNo description
PRINTSPR003671.3E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MKQSPPPVTD NGLTAAATTA VKSCSGGGRE TFSTTRHPVY HGVRKRRWGK WVSEIREPRK  60
KSRIWLGSFP VPEMAAKAYD VAALCLKGRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531065e-76AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489012.14e-59PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI26e-47ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A078HK187e-49A0A078HK18_BRANA; BnaCnng08620D protein
TrEMBLA0A0D3DZD57e-49A0A0D3DZD5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GIM37e-49A0A3P6GIM3_BRAOL; Uncharacterized protein
STRINGBo8g117810.11e-49(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]