PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC16686_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 323aa MW: 35252.2 Da PI: 8.9118 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.4 | 3.1e-38 | 41 | 101 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ RrC16686_p1 41 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 101 56789*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-33 | 44 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-27 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MFGNCDQKKK MPIVNSPNTN PPASMQSKNM IVAPSHQQQP PQPQLKCPRC DSSNTKFCYY 60 NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGSYRKNKRV KRPATTTTTA ASTVSTTTSS 120 CPNNPHHQIS HFPSMNHHPL FYGLSDQVSS CNNLPMFPSR FSDPSKTSNG LEGEFLSSGF 180 NGLGLGLQHH MSHDQTISGS FISNSTTNKP FLPSGLFESS VSSSSSTLLQ HPHKPMNNSG 240 EMMGQSHLQT LASLQDLHVG GNNEDVNKEG NLDEMSGNIN GFMPSSSLDP SNYHNIWNNA 300 SVSSGAWLDP TNNIVGSSLT SLI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC021044 | 0.0 | AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469654.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
Swissprot | Q9FZA4 | 1e-141 | DOF14_ARATH; Dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A3P6F8V9 | 0.0 | A0A3P6F8V9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g055750.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-143 | Dof family protein |