PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16637_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 204aa    MW: 23500 Da    PI: 5.1065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16637_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.23.3e-18167204137
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a +C+v+k+
  RrC16637_p1 167 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCTVRKQ 204
                  58***************************99******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.946162204IPR003657WRKY domain
SuperFamilySSF1182902.48E-16164204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-17164204IPR003657WRKY domain
SMARTSM007745.5E-8167204IPR003657WRKY domain
PfamPF031064.8E-15168204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEEAKEENRR LKSSLNRTKK DFEILQIQYN QLMVQHEDPN KFSPKSHHQD KDEDEDKGNI  60
SKGEELVLLS LGSMTNKEEK GKGLMDETGD RKKIDEHDKR NDQGLSMGLE YKDLSNPSEK  120
LEIDHSQEKT TLEVSNSNKI PSENSFGLKN DGDDHEDEEE LLPQNLMNDG CQWRKYGQKI  180
AKGNPCPRAY YRCTIAPSCT VRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300681e-53KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436079.11e-130PREDICTED: probable WRKY transcription factor 61
SwissprotQ8VWV61e-85WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A0D3DWK21e-106A0A0D3DWK2_BRAOL; Uncharacterized protein
STRINGBo8g103030.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.19e-88WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]