PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC165_p8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 31704.8 Da PI: 8.6179 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H RrC165_p8 164 FECGGCKKVFGSHQALGGHRASH 186 89************999999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.411 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.7E-8 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.4E-6 | 78 | 99 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-4 | 79 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-6 | 159 | 186 | No hit | No description |
Pfam | PF13912 | 1.1E-7 | 163 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 164 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3 | 164 | 186 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.1E-11 | 225 | 250 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.91E-5 | 225 | 251 | No hit | No description |
PROSITE profile | PS50157 | 9.141 | 226 | 248 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 226 | 248 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 228 | 248 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MATNNSDSDP SFHTPLTPTC NAIIPIYPNP NLQLALSPSY DQSPRKKRTK TVALPSSSSP 60 KPKYPRKPDP NAPKITRPCT ECGKRFWSWK ALFGHMRCHP ERHWRGINPP PNHRGPTPAS 120 FSNQNQRSPN WVSLMTEEDH EVASYLLMLA NSTPSSSSSC GERFECGGCK KVFGSHQALG 180 GHRASHKNVK GCFAITNVAD DPMTVTTTTP SDHDHQGKIV TFMGHHKCNV CFRVFSSGQA 240 LGGHMRCHWE KVEETMVCGA FDLNVPATTH DLSTSDTPGC SLDLRLGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490300.1 | 0.0 | PREDICTED: zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 1e-150 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A3P6F9E7 | 0.0 | A0A3P6F9E7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g117320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4619 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-147 | C2H2-like zinc finger protein |