PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16512_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 385aa    MW: 41696.3 Da    PI: 8.0989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16512_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045178200123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  RrC16512_p1 178 YQCKTCDRTFPSFQALGGHRASH 200
                  9***********99999998887 PP
2zf-C2H2130.00031255277123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  RrC16512_p1 255 HECGICGAEFTSGQALGGHMRRH 277
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-8177200No hitNo description
PfamPF139122.3E-12177202IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471178205IPR007087Zinc finger, C2H2
SMARTSM003550.028178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-8250277No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4253279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11254279IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93255279IPR007087Zinc finger, C2H2
SMARTSM003550.047255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDTAEEAILV AKEQALIIKG KRTKRQRLQS PIPFSIIPPM SSQEPDAQEE STSLVSKEKS  60
LNDEINNNNK NDNNILVNGV TSSSSASSSF NNATLKAAVD EEDQDMANCL ILLAQGHSLP  120
HHKFSHQQPL TRQLMGSCQE SGNNNNSNAY RSSSRRFLET SSSNGTTTSG GRAGYYVYQC  180
KTCDRTFPSF QALGGHRASH KKPKATAGLH DLKNSIYNDA VSLHLNNVLT TTPNNNNNNH  240
RSLVAYGKAN NNKVHECGIC GAEFTSGQAL GGHMRRHRGV VVSATTATPT ATLALPATAN  300
TALTLSPMSF DQMSDGPVQA PVKRARSAVV SLDLDLNLPA PEDENRVNGL SVALKQEHGH  360
EQTQRREEQK SIVLSSAPTL VDCYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438560.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3AEQ30.0A0A0D3AEQ3_BRAOL; Uncharacterized protein
STRINGBo1g143860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-122C2H2 family protein